Ace to Phylip Sequence Converter

Input format: ace Reads the contig sequences from an ACE assembly file. Uses Bio.Sequencing.Ace internally clustal The alignment format of Clustal X and Clustal W. See also the Bio.Clustalw module.

Output format: phylip An alignment format. Truncates names at 10 characters.

You can also convert between these formats by using command line tools.

On Windows install WSL, on Mac or Linux start terminal

Install BioPython

Run following script:

from Bio import SeqIO

records = SeqIO.parse("THIS_IS_YOUR_INPUT_FILE.ace", "ace")
count = SeqIO.write(records, "THIS_IS_YOUR_OUTPUT_FILE.phylip", "phylip")
print("Converted %i records" % count)

Or you can use this site as online ace to phylip converter by selecting your formats & file.