Input format: fasta This refers to the input FASTA file format introduced for Bill Pearson's FASTA tool, where each record starts with a '>' line. Resulting sequences have a generic alphabet by default.
Output format: clustal The alignment format of Clustal X and Clustal W.
How to convert from fasta to clustal ?
You can also convert between these formats by using command line tools.Sequence Converter Home page
Or you can use this site as online fasta to clustal converter by selecting your formats &
On Windows install WSL, on
or Linux start
Run following script:
from Bio import SeqIO records = SeqIO.parse("THIS_IS_YOUR_INPUT_FILE.fasta", "fasta") count = SeqIO.write(records, "THIS_IS_YOUR_OUTPUT_FILE.clustal", "clustal") print("Converted %i records" % count)