Convert SeqXML to Mauve XMFA alignment

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Convert a SeqXML sequence file to Mauve XMFA alignment.

Maximum file size: 50 MB. The file is checked before conversion.

SeqXML → Mauve XMFA alignment

  • The selected output is an alignment format. Every sequence must be the same length and already aligned. This does not create an alignment.
  • The output keeps only each record's ID, so description text (such as the words after the ID on a FASTA header line) is not kept.

About this conversion

The converter reads records in the input format and writes them in the output format. Data that the output format cannot store may be lost. The notes under the Convert file button list the important limits for this pair.

Run it with Biopython

For batch work, you can use Biopython's SeqIO.convert function. This pair needs no molecule type argument.

from Bio import SeqIO

count = SeqIO.convert("input.seqxml", "seqxml",
                      "output.mauve", "mauve")
print("Converted %i records" % count)

Sample input file: SeqXML

Copy this example into a file, or download it, to try a SeqXML conversion.

Download sample (sample.xml, 756 bytes)

Samples are small illustrative files. Some come from the Biopython test suite (see the project's sample notes); they are not real study data.

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