Swiss-Prot / UniProt text to GenBank converter

Convert a Swiss-Prot / UniProt text sequence file to GenBank.

Convert from Convert to Choose your sequence file

Maximum file size: 50 MB. The file is checked before conversion.

Swiss-Prot / UniProt text → GenBank

UniProt cross-references, comments, and other database annotations are not carried into the output.

About this conversion

The converter reads records in the input format and writes them in the output format. Data that the output format cannot store may be lost. The notes under the Convert file button list the important limits for this pair.

Run it with Biopython

For batch work, you can use Biopython's SeqIO.convert function. This pair needs no molecule type argument.

from Bio import SeqIO

count = SeqIO.convert("input.swiss", "swiss",
                      "output.genbank", "genbank")
print("Converted %i records" % count)

Sample input file: Swiss-Prot / UniProt text

Copy this example into a file, or download it, to try a Swiss-Prot / UniProt text conversion.

ID   IPI00383150.2         IPI;      PRT;   457 AA.
AC   IPI00383150;
DT   17-NOV-2003 (IPI Human rel. 2.26, Created)
DT   06-JAN-2004 (IPI Human rel. 2.28, Last sequence update)
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
OX   NCBI_TaxID=9606;
CC   -!- CHROMOSOME: 1.
DR   UniParc; UPI00002326EA; -; -.
DR   UTRdb; BB204794; U0015; 5'UTR.
DR   ENSEMBL; ENSP00000334892; ENSG00000185642; M.
SQ   SEQUENCE   457 AA;  52856 MW;  5C3151AAADBDE232 CRC64;
     MSFQAPRRLL ELAGQSLLRD QALAISVLDE LPRELFPRLF VEAFTSRRCE VLKVMVQAWP
     FPCLPLGSLM KTPDLEILHY VVDGIDCLLA QKVRPRRWKL QVLEMRDVDE NFWTIWSGAR
     PLSCSPEAMS KRQTVEDCPR TGEKQPLKVF MDVCLKEKSV DEDLSFFSGW VQHRRRSVHL
     CCTKVVNYSM NILNFRNILE TVYPDSIQVL EIWNMCWPCM VAEVSRYLSQ MKNLRKLFIS
     DGCGYLPSFE SQGQLVAEFS SVFLRLEYLQ MLYMRRIRFF EGYLDQLIRC LQNPLENLEL
     TYGYLLEEDM KCLSQYPSLG YLKHLNLSYV LLFRISLEPL GALLEKIAAS LETLILEGCQ
     IHYSQLSAIL PGLSHCSQLT TFYFGRNCMS MGALKDLLCH TSGLSKLSLE TYPAPEESLN
     SLVRVDWEIF ALLRAELMCT LREVRQPKRI FIGPTPC
//

Download sample (sample.txt, 1.1 KB)

Samples are small illustrative files. Some come from the Biopython test suite (see the project's sample notes); they are not real study data.

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